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题名Network Pharmacology and Bioinformatics Study of Geniposide Regulating Oxidative Stress in Colorectal Cancer
作者
发表日期2023-10-01
发表期刊International Journal of Molecular Sciences
ISSN/eISSN1661-6596
卷号24期号:20
摘要

This study aims to identify the mechanism of geniposide regulating oxidative stress in colorectal cancer (CRC) through network pharmacology and bioinformatics analysis. Targets of geniposide, oxidative stress-related targets and targets related to CRC were applied from databases. The hub genes for geniposide regulating oxidative stress in CRC were identified with the protein–protein interaction (PPI) network. Furthermore, we applied Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment to analyze the hub genes from a macro perspective. We verified the hub genes by molecular docking, GEPIA, HPA and starBase database. We identified five hub genes: IL1B, GSK3B, NOS3, RELA and CDK4. GO analysis results suggested that the anti-colorectal cancer effect of geniposide by regulating oxidative stress is possibly related to the influence of multiple biological processes, including response to temperature stimulus, response to alkaloid, nitric oxide biosynthetic process, nitric oxide metabolic process, reactive nitrogen species metabolic process, cellular response to peptide, etc. KEGG enrichment analysis results indicated that the PI3K–Akt signaling pathway, IL-17 signaling pathway, p53 signaling pathway, NF-κB signaling pathway and NOD-like receptor signaling pathway are likely to be the significant pathways. Molecular docking results showed that the geniposide had a good binding activity with the hub genes. This study demonstrates that geniposide can regulate oxidative stress in CRC, and induction of oxidative stress is one of the possible mechanisms of anti-recurrence and metastasis effects of geniposide against CRC.

关键词bioinformatics CRC geniposide molecular docking network pharmacology oxidative stress
DOI10.3390/ijms242015222
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收录类别SCIE
语种英语English
WOS研究方向Biochemistry & Molecular Biology ; Chemistry
WOS类目Biochemistry & Molecular Biology ; Chemistry, Multidisciplinary
WOS记录号WOS:001095378500001
Scopus入藏号2-s2.0-85175280312
引用统计
被引频次:8[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符https://repository.uic.edu.cn/handle/39GCC9TT/10888
专题理工科技学院
通讯作者Xu, Baojun
作者单位
Guangdong Provincial Key Laboratory IRADS,Department of Life Sciences,BNU-HKBU United International College,Zhuhai,519087,China
第一作者单位北师香港浸会大学
通讯作者单位北师香港浸会大学
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GB/T 7714
Wu, Yingzi,Luo, Jinhai,Xu, Baojun. Network Pharmacology and Bioinformatics Study of Geniposide Regulating Oxidative Stress in Colorectal Cancer[J]. International Journal of Molecular Sciences, 2023, 24(20).
APA Wu, Yingzi, Luo, Jinhai, & Xu, Baojun. (2023). Network Pharmacology and Bioinformatics Study of Geniposide Regulating Oxidative Stress in Colorectal Cancer. International Journal of Molecular Sciences, 24(20).
MLA Wu, Yingzi,et al."Network Pharmacology and Bioinformatics Study of Geniposide Regulating Oxidative Stress in Colorectal Cancer". International Journal of Molecular Sciences 24.20(2023).
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