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题名Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data
作者
发表日期2020
发表期刊BMC Bioinformatics
ISSN/eISSN1471-2105
卷号21期号:1
摘要

Background: Feature selection in class-imbalance learning has gained increasing attention in recent years due to the massive growth of high-dimensional class-imbalanced data across many scientific fields. In addition to reducing model complexity and discovering key biomarkers, feature selection is also an effective method of combating overlapping which may arise in such data and become a crucial aspect for determining classification performance. However, ordinary feature selection techniques for classification can not be simply used for addressing class-imbalanced data without any adjustment. Thus, more efficient feature selection technique must be developed for complicated class-imbalanced data, especially in the context of high-dimensionality. Results: We proposed an algorithm called sssHD to achieve stable sparse feature selection applied it to complicated class-imbalanced data. sssHD is based on the Hellinger distance (HD) coupled with sparse regularization techniques. We stated that Hellinger distance is not only class-insensitive but also translation-invariant. Simulation result indicates that HD-based selection algorithm is effective in recognizing key features and control false discoveries for class-imbalance learning. Five gene expression datasets are also employed to test the performance of the sssHD algorithm, and a comparison with several existing selection procedures is performed. The result shows that sssHD is highly competitive in terms of five assessment metrics. In addition, sssHD presents limited differences between performing and not performing re-balance preprocessing. Conclusions: sssHD is a practical feature selection method for high-dimensional class-imbalanced data, which is simple and can be an alternative for performing feature selection in class-imbalanced data. sssHD can be easily extended by connecting it with different re-balance preprocessing, different sparse regularization structures as well as different classifiers. As such, the algorithm is extremely general and has a wide range of applicability. © 2020 The Author(s).

关键词Class-imbalance learning Feature selection Hellinger distance Sparse regularization
DOI10.1186/s12859-020-3411-3
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收录类别SCIE
语种英语English
WOS研究方向Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology
WOS类目Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology
WOS记录号WOS:000522037500001
引用统计
被引频次:28[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符https://repository.uic.edu.cn/handle/39GCC9TT/5046
专题个人在本单位外知识产出
作者单位
1.School of Science, Kunming University of Science and Technology, Kunming, 650500, China
2.School of Mathematics, University of Manchester, Manchester, M13 9PL, United Kingdom
推荐引用方式
GB/T 7714
Fu, Guang-Hui,Wu, Yuan-Jiao,Zong, Min-Jieet al. Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data[J]. BMC Bioinformatics, 2020, 21(1).
APA Fu, Guang-Hui, Wu, Yuan-Jiao, Zong, Min-Jie, & Pan, Jianxin. (2020). Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data. BMC Bioinformatics, 21(1).
MLA Fu, Guang-Hui,et al."Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data". BMC Bioinformatics 21.1(2020).
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