Status | 已发表Published |
Title | Uncertainty quantification in molecular property prediction through spherical mixture density networks |
Creator | |
Date Issued | 2023-08-01 |
Source Publication | Engineering Applications of Artificial Intelligence
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ISSN | 0952-1976 |
Volume | 123 |
Abstract | As uncertainty quantification is crucial for determining undesirable inputs and improving decisions made by a system to acquire accurate evaluations, it has received much attention in recent years. Motivated by the fact that probability is one of the most effective ways to estimate uncertainty, in this work we propose an effective probabilistic model for quantifying predictive uncertainty in the task of predicting chemical molecular properties. Our model is formulated by developing a spherical mixture density network that is composed of von Mises-Fisher kernel distributions to model graph-structured molecule representations. Furthermore, an ensemble framework for spherical mixture density networks is developed, which can yield high quality predictive uncertainty estimates and obtain better confidence intervals reflecting the sources of these uncertainties in predictions. The effectiveness of our approach in modeling the output predictive uncertainty is validated through empirical analysis on molecular property prediction tasks with two publicly available chemical molecule data sets. Comparing with the current state-of-the-art baselines, our model can better model predictive uncertainty in terms of higher log-likelihood of the data, and reveal that there might be more than one acceptable chemical property associated with an input molecule representation. |
Keyword | Graph structure data Mixture density network Molecular property predictions Uncertainty quantification Von mises-fisher distribution |
DOI | 10.1016/j.engappai.2023.106180 |
URL | View source |
Indexed By | SCIE |
Language | 英语English |
WOS Research Area | Automation & Control Systems ; Computer Science ; Engineering |
WOS Subject | Automation & Control Systems ; Computer Science, Artificial Intelligence ; Engineering, Multidisciplinary ; Engineering, Electrical & Electronic |
WOS ID | WOS:000967705500001 |
Scopus ID | 2-s2.0-85150917928 |
Citation statistics | |
Document Type | Journal article |
Identifier | http://repository.uic.edu.cn/handle/39GCC9TT/10801 |
Collection | Faculty of Science and Technology |
Corresponding Author | Fan, Wentao |
Affiliation | 1.Department of Computer Science, Beijing Normal University-Hong Kong Baptist University United International College, Zhuhai, Guangdong, China 2.Department of Computer Science and Technology, Huaqiao University, Xiamen, China 3.BNU-UIC Institute of Artificial Intelligence and Future Networks, Beijing Normal University, Zhuhai, Guangdong, China 4.Guangdong Key Lab of AI and Multi-Modal Data Processing, BNU-HKBU United International College (UIC), Zhuhai, China 5.Guangdong Provincial Key Laboratory of Interdisciplinary Research and Application for Data Science, BNU-HKBU United International College, Zhuhai, China |
First Author Affilication | Beijing Normal-Hong Kong Baptist University |
Corresponding Author Affilication | Beijing Normal-Hong Kong Baptist University |
Recommended Citation GB/T 7714 | Fan, Wentao,Zeng, Lidan,Wang, Tian. Uncertainty quantification in molecular property prediction through spherical mixture density networks[J]. Engineering Applications of Artificial Intelligence, 2023, 123. |
APA | Fan, Wentao, Zeng, Lidan, & Wang, Tian. (2023). Uncertainty quantification in molecular property prediction through spherical mixture density networks. Engineering Applications of Artificial Intelligence, 123. |
MLA | Fan, Wentao,et al."Uncertainty quantification in molecular property prediction through spherical mixture density networks". Engineering Applications of Artificial Intelligence 123(2023). |
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