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Status已发表Published
TitleUncertainty quantification in molecular property prediction through spherical mixture density networks
Creator
Date Issued2023-08-01
Source PublicationEngineering Applications of Artificial Intelligence
ISSN0952-1976
Volume123
Abstract

As uncertainty quantification is crucial for determining undesirable inputs and improving decisions made by a system to acquire accurate evaluations, it has received much attention in recent years. Motivated by the fact that probability is one of the most effective ways to estimate uncertainty, in this work we propose an effective probabilistic model for quantifying predictive uncertainty in the task of predicting chemical molecular properties. Our model is formulated by developing a spherical mixture density network that is composed of von Mises-Fisher kernel distributions to model graph-structured molecule representations. Furthermore, an ensemble framework for spherical mixture density networks is developed, which can yield high quality predictive uncertainty estimates and obtain better confidence intervals reflecting the sources of these uncertainties in predictions. The effectiveness of our approach in modeling the output predictive uncertainty is validated through empirical analysis on molecular property prediction tasks with two publicly available chemical molecule data sets. Comparing with the current state-of-the-art baselines, our model can better model predictive uncertainty in terms of higher log-likelihood of the data, and reveal that there might be more than one acceptable chemical property associated with an input molecule representation.

KeywordGraph structure data Mixture density network Molecular property predictions Uncertainty quantification Von mises-fisher distribution
DOI10.1016/j.engappai.2023.106180
URLView source
Indexed BySCIE
Language英语English
WOS Research AreaAutomation & Control Systems ; Computer Science ; Engineering
WOS SubjectAutomation & Control Systems ; Computer Science, Artificial Intelligence ; Engineering, Multidisciplinary ; Engineering, Electrical & Electronic
WOS IDWOS:000967705500001
Scopus ID2-s2.0-85150917928
Citation statistics
Cited Times:4[WOS]   [WOS Record]     [Related Records in WOS]
Document TypeJournal article
Identifierhttp://repository.uic.edu.cn/handle/39GCC9TT/10801
CollectionFaculty of Science and Technology
Corresponding AuthorFan, Wentao
Affiliation
1.Department of Computer Science, Beijing Normal University-Hong Kong Baptist University United International College, Zhuhai, Guangdong, China
2.Department of Computer Science and Technology, Huaqiao University, Xiamen, China
3.BNU-UIC Institute of Artificial Intelligence and Future Networks, Beijing Normal University, Zhuhai, Guangdong, China
4.Guangdong Key Lab of AI and Multi-Modal Data Processing, BNU-HKBU United International College (UIC), Zhuhai, China
5.Guangdong Provincial Key Laboratory of Interdisciplinary Research and Application for Data Science, BNU-HKBU United International College, Zhuhai, China
First Author AffilicationBeijing Normal-Hong Kong Baptist University
Corresponding Author AffilicationBeijing Normal-Hong Kong Baptist University
Recommended Citation
GB/T 7714
Fan, Wentao,Zeng, Lidan,Wang, Tian. Uncertainty quantification in molecular property prediction through spherical mixture density networks[J]. Engineering Applications of Artificial Intelligence, 2023, 123.
APA Fan, Wentao, Zeng, Lidan, & Wang, Tian. (2023). Uncertainty quantification in molecular property prediction through spherical mixture density networks. Engineering Applications of Artificial Intelligence, 123.
MLA Fan, Wentao,et al."Uncertainty quantification in molecular property prediction through spherical mixture density networks". Engineering Applications of Artificial Intelligence 123(2023).
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