发表状态 | 已发表Published |
题名 | Fragment-pair based drug molecule solubility prediction through attention mechanism |
作者 | |
发表日期 | 2023 |
发表期刊 | Frontiers in Pharmacology
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卷号 | 14 |
摘要 | The purpose of drug discovery is to identify new drugs, and the solubility of drug molecules is an important physicochemical property in medicinal chemistry, that plays a crucial role in drug discovery. In solubility prediction, high-precision computational methods can significantly reduce the experimental costs and time associated with drug development. Therefore, artificial intelligence technologies have been widely used for solubility prediction. This study utilized the attention layer in mechanism in the deep learning model to consider the atomic-level features of the molecules, and used gated recurrent neural networks to aggregate vectors between layers. It also utilized molecular fragment technology to divide the complete molecule into pairs of fragments, extracted characteristics from each fragment pair, and finally fused the characteristics to predict the solubility of drug molecules. We compared and evaluated our method with five existing models using two performance evaluation indicators, demonstrating that our method has better performance and greater robustness. |
关键词 | attention mechanism drug discovery drug molecules fragments solubility prediction |
DOI | 10.3389/fphar.2023.1255181 |
URL | 查看来源 |
收录类别 | SCIE |
语种 | 英语English |
WOS研究方向 | Pharmacology & Pharmacy |
WOS类目 | Pharmacology & Pharmacy |
WOS记录号 | WOS:001087842600001 |
Scopus入藏号 | 2-s2.0-85174906242 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | https://repository.uic.edu.cn/handle/39GCC9TT/13010 |
专题 | 理工科技学院 |
通讯作者 | Lei, Xiujuan |
作者单位 | 1.School of Computer Science,Shaanxi Normal University,Xi’an,China 2.Computer Science Department,BNU-HKBU United International College,Zhuhai,China 3.Faculty of Computer Science and Control Engineering,Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences,Shenzhen,China 4.Shenzhen Key Laboratory of Intelligent Bioinformatics,Shenzhen Institute of Advanced Technology,Shenzhen,China |
推荐引用方式 GB/T 7714 | Liu, Jianping,Lei, Xiujuan,Ji, Chunyanet al. Fragment-pair based drug molecule solubility prediction through attention mechanism[J]. Frontiers in Pharmacology, 2023, 14. |
APA | Liu, Jianping, Lei, Xiujuan, Ji, Chunyan, & Pan, Yi. (2023). Fragment-pair based drug molecule solubility prediction through attention mechanism. Frontiers in Pharmacology, 14. |
MLA | Liu, Jianping,et al."Fragment-pair based drug molecule solubility prediction through attention mechanism". Frontiers in Pharmacology 14(2023). |
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