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题名A Prognostic Risk Score Based on Hypoxia-, Immunity-, and Epithelialto-Mesenchymal Transition-Related Genes for the Prognosis and Immunotherapy Response of Lung Adenocarcinoma
作者
发表日期2022-01-24
发表期刊Frontiers in Cell and Developmental Biology
ISSN/eISSN2296-634X
卷号9
摘要

Background: Lung adenocarcinoma (LUAD), the most common subtype of non-small cell lung cancer (NSCLC), is associated with poor prognosis. However, current stage-based clinical methods are insufficient for survival prediction and decision-making. This study aimed to establish a novel model for evaluating the risk of LUAD based on hypoxia, immunity, and epithelial-mesenchymal transition (EMT) gene signatures. Methods: In this study, we used data from TCGA-LUAD for the training cohort and GSE68465 and GSE72094 for the validation cohorts. Immunotherapy datasets GSE135222, GSE126044, and IMvigor210 were obtained from a previous study. Using bioinformatic and machine algorithms, we established a risk model based on hypoxia, immune, and EMT gene signatures, which was then used to divide patients into the high and low risk groups. We analyzed differences in enriched pathways between the two groups, following which we investigated whether the risk score was correlated with stemness scores, genes related to mA, mC, mA and mG modification, the immune microenvironment, immunotherapy response, and multiple anti-cancer drug sensitivity. Results: Overall survival differed significantly between the high-risk and low-risk groups (HR = 4.26). The AUCs for predicting 1-, 3-, and 5-year survival were 0.763, 0.766, and 0.728, respectively. In the GSE68465 dataset, the HR was 2.03, while the AUCs for predicting 1-, 3-, and 5-year survival were 0.69, 0.651, and 0.618, respectively. The corresponding values in the GSE72094 dataset were an HR of 2.36 and AUCs of 0.653, 0.662, and 0.749, respectively. The risk score model could independently predict OS in patients with LUAD, and highly correlated with stemness scores and numerous mA, mC, mA and mG modification-related genes. Furthermore, the risk model was significantly correlated with multiple immune microenvironment characteristics. In the GSE135222 dataset, the HR was 4.26 and the AUC was 0.702. Evaluation of the GSE126044 and IMvigor210 cohorts indicated that PD-1/PD-LI inhibitor treatment may be indicated in patients with low risk scores, while anti-cancer therapy with various drugs may be indicated in patients with high risk scores. Conclusion: Our novel risk model developed based on hypoxia, immune, and EMT gene signatures can aid in predicting clinical prognosis and guiding treatment in patients with LUAD.

关键词EMT gene signature hypoxia immune immunotherapy response lung adenocarcinoma
DOI10.3389/fcell.2021.758777
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收录类别SCIE
语种英语English
WOS研究方向Cell Biology ; Developmental Biology
WOS类目Cell Biology ; Developmental Biology
WOS记录号WOS:000752048000001
Scopus入藏号2-s2.0-85124228100
引用统计
文献类型期刊论文
条目标识符https://repository.uic.edu.cn/handle/39GCC9TT/8259
专题北师香港浸会大学
通讯作者Yao, Herui
作者单位
1.Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation,Department of Medical Oncology,Breast Tumor Centre,Phase I Clinical Trial Centre,Sun Yat-Sen Memorial Hospital,Sun Yat-Sen University,Guangzhou,China
2.Department of Pulmonary and Critical Care Medicine,Sun Yat-Sen Memorial Hospital,Sun Yat-Sen University,Guangzhou,China
3.Department of Ultrasound in Medicine,Sun Yat-Sen Memorial Hospital,Sun Yat-Sen University,Guangzhou,China
4.Artificial Intelligence and Digital Media Programme,Division of Science and Technology,Beijing Normal University-Hong Kong Baptist University United International College,Hong Kong Baptist University,Zhuhai,China
推荐引用方式
GB/T 7714
Ouyang, Wenhao,Jiang, Yupeng,Bu, Shiyiet al. A Prognostic Risk Score Based on Hypoxia-, Immunity-, and Epithelialto-Mesenchymal Transition-Related Genes for the Prognosis and Immunotherapy Response of Lung Adenocarcinoma[J]. Frontiers in Cell and Developmental Biology, 2022, 9.
APA Ouyang, Wenhao., Jiang, Yupeng., Bu, Shiyi., Tang, Tiantian., Huang, Linjie., .. & Lin, Xiaoling. (2022). A Prognostic Risk Score Based on Hypoxia-, Immunity-, and Epithelialto-Mesenchymal Transition-Related Genes for the Prognosis and Immunotherapy Response of Lung Adenocarcinoma. Frontiers in Cell and Developmental Biology, 9.
MLA Ouyang, Wenhao,et al."A Prognostic Risk Score Based on Hypoxia-, Immunity-, and Epithelialto-Mesenchymal Transition-Related Genes for the Prognosis and Immunotherapy Response of Lung Adenocarcinoma". Frontiers in Cell and Developmental Biology 9(2022).
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