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题名The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs
作者
发表日期2021-11-15
发表期刊PLoS Genetics
ISSN/eISSN1553-7390
卷号17期号:11
摘要

Natural and artificial directional selections have resulted in significantly genetic and phenotypic differences across breeds in domestic animals. However, the molecular regulation of skeletal muscle diversity remains largely unknown. Here, we conducted transcriptome profiling of skeletal muscle across 27 time points, and performed whole-genome re-sequencing in Landrace (lean-type) and Tongcheng (obese-type) pigs. The transcription activity decreased with development, and the high-resolution transcriptome precisely captured the characterizations of skeletal muscle with distinct biological events in four developmental phases: Embryonic, Fetal, Neonatal, and Adult. A divergence in the developmental timing and asynchronous development between the two breeds was observed; Landrace showed a developmental lag and stronger abilities of myoblast proliferation and cell migration, whereas Tongcheng had higher ATP synthase activity in postnatal periods. The miR-24-3p driven network targeting insulin signaling pathway regulated glucose metabolism. Notably, integrated analysis suggested SATB2 and XLOC-036765 contributed to skeletal muscle diversity via regulating the myoblast migration and proliferation, respectively. Overall, our results provide insights into the molecular regulation of skeletal muscle development and diversity in mammals.

DOI10.1371/journal.pgen.1009910
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收录类别SCIE
语种英语English
WOS研究方向Genetics & Heredity
WOS类目Genetics & Heredity
WOS记录号WOS:000727767200005
Scopus入藏号2-s2.0-85119928901
引用统计
文献类型期刊论文
条目标识符https://repository.uic.edu.cn/handle/39GCC9TT/9043
专题个人在本单位外知识产出
通讯作者Li, Shuai Cheng; Li, Kui; Tang, Zhonglin
作者单位
1.Shenzhen Branch,Guangdong Laboratory for Lingnan Modern Agriculture,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen,China
2.Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen,China
3.Kunpeng Institute of Modern Agriculture at Foshan,Foshan,China
4.Department of Computer Science,City University of Hong Kong,Kowloon,Hong Kong
5.Guangxi Engineering Centre for Resource Development of Bama Xiang Pig,China
6.Biozeron Shenzhen,Inc.,Shenzhen,China
7.Institute of Animal Sciences,Chinese Academy of Agricultural Sciences,Beijing,China
8.Research Centre of Animal Nutritional Genomics,State Key Laboratory of Animal Nutrition,Institute of Animal Sciences,Chinese Academy of Agricultural Sciences,Shenzhen,China
推荐引用方式
GB/T 7714
Yang, Yalan,Yan, Junyu,Fan, Xinhaoet al. The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs[J]. PLoS Genetics, 2021, 17(11).
APA Yang, Yalan., Yan, Junyu., Fan, Xinhao., Chen, Jiaxing., Wang, Zishuai., .. & Tang, Zhonglin. (2021). The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs. PLoS Genetics, 17(11).
MLA Yang, Yalan,et al."The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs". PLoS Genetics 17.11(2021).
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