发表状态 | 已发表Published |
题名 | The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs |
作者 | |
发表日期 | 2021-11-15 |
发表期刊 | PLoS Genetics
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ISSN/eISSN | 1553-7390 |
卷号 | 17期号:11 |
摘要 | Natural and artificial directional selections have resulted in significantly genetic and phenotypic differences across breeds in domestic animals. However, the molecular regulation of skeletal muscle diversity remains largely unknown. Here, we conducted transcriptome profiling of skeletal muscle across 27 time points, and performed whole-genome re-sequencing in Landrace (lean-type) and Tongcheng (obese-type) pigs. The transcription activity decreased with development, and the high-resolution transcriptome precisely captured the characterizations of skeletal muscle with distinct biological events in four developmental phases: Embryonic, Fetal, Neonatal, and Adult. A divergence in the developmental timing and asynchronous development between the two breeds was observed; Landrace showed a developmental lag and stronger abilities of myoblast proliferation and cell migration, whereas Tongcheng had higher ATP synthase activity in postnatal periods. The miR-24-3p driven network targeting insulin signaling pathway regulated glucose metabolism. Notably, integrated analysis suggested SATB2 and XLOC-036765 contributed to skeletal muscle diversity via regulating the myoblast migration and proliferation, respectively. Overall, our results provide insights into the molecular regulation of skeletal muscle development and diversity in mammals. |
DOI | 10.1371/journal.pgen.1009910 |
URL | 查看来源 |
收录类别 | SCIE |
语种 | 英语English |
WOS研究方向 | Genetics & Heredity |
WOS类目 | Genetics & Heredity |
WOS记录号 | WOS:000727767200005 |
Scopus入藏号 | 2-s2.0-85119928901 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | https://repository.uic.edu.cn/handle/39GCC9TT/9043 |
专题 | 个人在本单位外知识产出 |
通讯作者 | Li, Shuai Cheng; Li, Kui; Tang, Zhonglin |
作者单位 | 1.Shenzhen Branch,Guangdong Laboratory for Lingnan Modern Agriculture,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen,China 2.Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen,China 3.Kunpeng Institute of Modern Agriculture at Foshan,Foshan,China 4.Department of Computer Science,City University of Hong Kong,Kowloon,Hong Kong 5.Guangxi Engineering Centre for Resource Development of Bama Xiang Pig,China 6.Biozeron Shenzhen,Inc.,Shenzhen,China 7.Institute of Animal Sciences,Chinese Academy of Agricultural Sciences,Beijing,China 8.Research Centre of Animal Nutritional Genomics,State Key Laboratory of Animal Nutrition,Institute of Animal Sciences,Chinese Academy of Agricultural Sciences,Shenzhen,China |
推荐引用方式 GB/T 7714 | Yang, Yalan,Yan, Junyu,Fan, Xinhaoet al. The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs[J]. PLoS Genetics, 2021, 17(11). |
APA | Yang, Yalan., Yan, Junyu., Fan, Xinhao., Chen, Jiaxing., Wang, Zishuai., .. & Tang, Zhonglin. (2021). The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs. PLoS Genetics, 17(11). |
MLA | Yang, Yalan,et al."The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs". PLoS Genetics 17.11(2021). |
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