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Status已发表Published
TitleImmune gene patterns and characterization of the tumor immune microenvironment associated with cancer immunotherapy efficacy
Creator
Date Issued2023-03-01
Source PublicationHeliyon
ISSN2405-8440
Volume9Issue:3
Abstract

Although immunotherapy has revolutionized cancer management, most patients do not derive benefits from it. Aiming to explore an appropriate strategy for immunotherapy efficacy prediction, we collected 6251 patients’ transcriptome data from multicohort population and analyzed the data using a machine learning algorithm. In this study, we found that patients from three immune gene clusters had different overall survival when treated with immunotherapy (P < 0.001), and that these clusters had differential states of hypoxia scores and metabolism functions. The immune gene score showed good immunotherapy efficacy prediction (AUC was 0.737 at 20 months), which was well validated. The immune gene score, tumor mutation burden, and long non-coding RNA score were further combined to build a tumor immune microenvironment signature, which correlated more strongly with overall survival (AUC, 0.814 at 20 months) than when using a single variable. Thus, we recommend using the characterization of the tumor immune microenvironment associated with immunotherapy efficacy via a multi-omics analysis of cancer.

KeywordCancer Immunotherapy Machine learning Tumor immune microenvironment
DOI10.1016/j.heliyon.2023.e14450
URLView source
Language英语English
Scopus ID2-s2.0-85150341302
Citation statistics
Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document TypeJournal article
Identifierhttp://repository.uic.edu.cn/handle/39GCC9TT/10286
CollectionFaculty of Science and Technology
Corresponding AuthorYu, Yunfang
Affiliation
1.Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation,Department of Medical Oncology,Breast Tumor Centre,Phase I Clinical Trial Centre,Medical Research Center,Sun Yat-sen Memorial Hospital of Sun Yat-sen University,Guangzhou,China
2.Department of Oncology,Zhujiang Hospital of Southern Medical University,Guangzhou,China
3.Department of Medical Oncology,Third Affiliated Hospital of Sun Yat-sen University,Guangzhou,China
4.Division of Science and Technology,Beijing Normal University-Hong Kong Baptist University United International College,Hong Kong Baptist University,Zhuhai,China
5.Faculty of Medicine,Macau University of Science and Technology,Taipa, Macao,China
Corresponding Author AffilicationBeijing Normal-Hong Kong Baptist University
Recommended Citation
GB/T 7714
Lin, Lili,Zhang, Wenda,Chen, Yongjianet al. Immune gene patterns and characterization of the tumor immune microenvironment associated with cancer immunotherapy efficacy[J]. Heliyon, 2023, 9(3).
APA Lin, Lili., Zhang, Wenda., Chen, Yongjian., Ren, Wei., Zhao, Jianli., .. & Yu, Yunfang. (2023). Immune gene patterns and characterization of the tumor immune microenvironment associated with cancer immunotherapy efficacy. Heliyon, 9(3).
MLA Lin, Lili,et al."Immune gene patterns and characterization of the tumor immune microenvironment associated with cancer immunotherapy efficacy". Heliyon 9.3(2023).
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