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Status已发表Published
TitleMachine learning based predictive analysis of DNA cleavage induced by diverse nanomaterials
Creator
Date Issued2024-12-01
Source PublicationScientific Reports
ISSN2045-2322
Volume14Issue:1
Abstract

DNA cleavage by nanomaterials has the potential to be utilized as an innovative tool for gene editing. Numerous nanomaterials exhibiting DNA cleavage properties have been identified and cataloged. Yet, the exploitation of property data through data-driven machine-learning approaches remains unexplored. A database was developed, compiling thirty distinctive characteristics, encompassing physical and chemical properties, as well as experimental conditions of nanomaterials that have demonstrated DNA cleavage capability such as in articles published over the past two decades. The DNA cleavage effect and efficiency of nanomaterials were predicted using machine learning algorithms such as support vector machines, deep neural networks, and random forest, and a classification accuracy of 0.93 for the cleavage effect was achieved. Moreover, the potential of utilizing larger datasets to enhance the predictive capacity of models was discussed. The findings indicate the feasibility of predicting nanomaterial properties based on experimental data. Evaluating the performance and effectiveness of the machine learning models trained using the existing data can furnish valuable insights for future materials research endeavors, especially for the design of DNA cleavage with specific sites.

DOI10.1038/s41598-024-73140-1
URLView source
Indexed BySCIE
Language英语English
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:001317591600014
Scopus ID2-s2.0-85204426213
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document TypeJournal article
Identifierhttp://repository.uic.edu.cn/handle/39GCC9TT/12060
CollectionBeijing Normal-Hong Kong Baptist University
Corresponding AuthorWu, Pan
Affiliation
1.College of Resources and Environmental Engineering,Guizhou University,Guiyang,550025,China
2.Key Laboratory of Karst Georesources and Environment,Ministry of Education,Guiyang,550025,China
3.School of Environment,Jinan University,Guangzhou,510632,China
4.Environmental Science Program,Department of Life Sciences,Beijing Normal University-Hong Kong Baptist University United International College,Zhuhai,No. 2000 Jintong Road, Tangjiawan, Guangdong,519087,China
5.College of Chemistry and Materials Science,Jinan University,Guangzhou,510632,China
6.College of Life Science and Technology,Jinan University,Guangzhou,510632,China
Recommended Citation
GB/T 7714
Niu, Jie,Wang, Xufeng,Chen, Jianglinget al. Machine learning based predictive analysis of DNA cleavage induced by diverse nanomaterials[J]. Scientific Reports, 2024, 14(1).
APA Niu, Jie., Wang, Xufeng., Chen, Jiangling., Zhao, Yingcan., Chen, Xiaohui., .. & Wu, Pan. (2024). Machine learning based predictive analysis of DNA cleavage induced by diverse nanomaterials. Scientific Reports, 14(1).
MLA Niu, Jie,et al."Machine learning based predictive analysis of DNA cleavage induced by diverse nanomaterials". Scientific Reports 14.1(2024).
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