发表状态 | 已发表Published |
题名 | Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles |
作者 | |
发表日期 | 2022 |
发表期刊 | Chinese Chemical Letters
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ISSN/eISSN | 1001-8417 |
卷号 | 33期号:12页码:5184-5188 |
摘要 | Exposure to environmental cadmium increases the health risk of residents. Early urine metabolic detection using high-resolution mass spectrometry and machine learning algorithms would be advantageous to predict the adverse health effects. Here, we conducted machine learning approaches to screen potential biomarkers under cadmium exposure in 403 urine samples. In positive and negative ionization mode, 4207 and 3558 features were extracted, respectively. We compared seven machine learning algorithms and found that the extreme gradient boosting (XGBoost) and random forest (RF) classifiers showed better accuracy and predictive performance than others. Following 5-fold cross-validation, the value of area under curve (AUC) was both 0.93 for positive and negative ionization modes in XGBoost classifier. In the RF classifier, AUC were 0.80 and 0.84 for positive and negative ionization modes, respectively. We then identified a biomarker panel based on XGBoost and RF classifiers. The incorporation of machine learning models into urine analysis using high-resolution mass spectrometry could allow a convenient assessment of cadmium exposure. |
关键词 | Cadmium exposure High-resolution mass spectrometry Human urine Machine learning Metabolic profiles |
DOI | 10.1016/j.cclet.2022.03.020 |
URL | 查看来源 |
收录类别 | SCIE |
语种 | 英语English |
WOS研究方向 | Chemistry |
WOS类目 | Chemistry, Multidisciplinary |
WOS记录号 | WOS:000852679000040 |
Scopus入藏号 | 2-s2.0-85128564826 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | https://repository.uic.edu.cn/handle/39GCC9TT/8921 |
专题 | 理工科技学院 |
通讯作者 | Cai, Zongwei |
作者单位 | 1.Food Science and Technology Program,Beijing Normal University-Hong Kong Baptist University United International College,Zhuhai,519087,China 2.State Key Laboratory of Environmental and Biological Analysis,Department of Chemistry,Hong Kong Baptist University,Hong Kong,Hong Kong 3.Department of Nutrition,Food Safety and Toxicology,West China School of Public Health,Sichuan University,Chengdu,610041,China |
第一作者单位 | 北师香港浸会大学 |
推荐引用方式 GB/T 7714 | Zeng, Ting,Liang, Yanshan,Dai, Qingyuanet al. Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles[J]. Chinese Chemical Letters, 2022, 33(12): 5184-5188. |
APA | Zeng, Ting., Liang, Yanshan., Dai, Qingyuan., Tian, Jinglin., Chen, Jinyao., .. & Cai, Zongwei. (2022). Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles. Chinese Chemical Letters, 33(12), 5184-5188. |
MLA | Zeng, Ting,et al."Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles". Chinese Chemical Letters 33.12(2022): 5184-5188. |
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