Status | 已发表Published |
Title | Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles |
Creator | |
Date Issued | 2022 |
Source Publication | Chinese Chemical Letters
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ISSN | 1001-8417 |
Volume | 33Issue:12Pages:5184-5188 |
Abstract | Exposure to environmental cadmium increases the health risk of residents. Early urine metabolic detection using high-resolution mass spectrometry and machine learning algorithms would be advantageous to predict the adverse health effects. Here, we conducted machine learning approaches to screen potential biomarkers under cadmium exposure in 403 urine samples. In positive and negative ionization mode, 4207 and 3558 features were extracted, respectively. We compared seven machine learning algorithms and found that the extreme gradient boosting (XGBoost) and random forest (RF) classifiers showed better accuracy and predictive performance than others. Following 5-fold cross-validation, the value of area under curve (AUC) was both 0.93 for positive and negative ionization modes in XGBoost classifier. In the RF classifier, AUC were 0.80 and 0.84 for positive and negative ionization modes, respectively. We then identified a biomarker panel based on XGBoost and RF classifiers. The incorporation of machine learning models into urine analysis using high-resolution mass spectrometry could allow a convenient assessment of cadmium exposure. |
Keyword | Cadmium exposure High-resolution mass spectrometry Human urine Machine learning Metabolic profiles |
DOI | 10.1016/j.cclet.2022.03.020 |
URL | View source |
Indexed By | SCIE |
Language | 英语English |
WOS Research Area | Chemistry |
WOS Subject | Chemistry, Multidisciplinary |
WOS ID | WOS:000852679000040 |
Scopus ID | 2-s2.0-85128564826 |
Citation statistics | |
Document Type | Journal article |
Identifier | http://repository.uic.edu.cn/handle/39GCC9TT/8921 |
Collection | Faculty of Science and Technology |
Corresponding Author | Cai, Zongwei |
Affiliation | 1.Food Science and Technology Program,Beijing Normal University-Hong Kong Baptist University United International College,Zhuhai,519087,China 2.State Key Laboratory of Environmental and Biological Analysis,Department of Chemistry,Hong Kong Baptist University,Hong Kong,Hong Kong 3.Department of Nutrition,Food Safety and Toxicology,West China School of Public Health,Sichuan University,Chengdu,610041,China |
First Author Affilication | Beijing Normal-Hong Kong Baptist University |
Recommended Citation GB/T 7714 | Zeng, Ting,Liang, Yanshan,Dai, Qingyuanet al. Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles[J]. Chinese Chemical Letters, 2022, 33(12): 5184-5188. |
APA | Zeng, Ting., Liang, Yanshan., Dai, Qingyuan., Tian, Jinglin., Chen, Jinyao., .. & Cai, Zongwei. (2022). Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles. Chinese Chemical Letters, 33(12), 5184-5188. |
MLA | Zeng, Ting,et al."Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles". Chinese Chemical Letters 33.12(2022): 5184-5188. |
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