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Status已发表Published
TitleApplication of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles
Creator
Date Issued2022
Source PublicationChinese Chemical Letters
ISSN1001-8417
Volume33Issue:12Pages:5184-5188
Abstract

Exposure to environmental cadmium increases the health risk of residents. Early urine metabolic detection using high-resolution mass spectrometry and machine learning algorithms would be advantageous to predict the adverse health effects. Here, we conducted machine learning approaches to screen potential biomarkers under cadmium exposure in 403 urine samples. In positive and negative ionization mode, 4207 and 3558 features were extracted, respectively. We compared seven machine learning algorithms and found that the extreme gradient boosting (XGBoost) and random forest (RF) classifiers showed better accuracy and predictive performance than others. Following 5-fold cross-validation, the value of area under curve (AUC) was both 0.93 for positive and negative ionization modes in XGBoost classifier. In the RF classifier, AUC were 0.80 and 0.84 for positive and negative ionization modes, respectively. We then identified a biomarker panel based on XGBoost and RF classifiers. The incorporation of machine learning models into urine analysis using high-resolution mass spectrometry could allow a convenient assessment of cadmium exposure.

KeywordCadmium exposure High-resolution mass spectrometry Human urine Machine learning Metabolic profiles
DOI10.1016/j.cclet.2022.03.020
URLView source
Indexed BySCIE
Language英语English
WOS Research AreaChemistry
WOS SubjectChemistry, Multidisciplinary
WOS IDWOS:000852679000040
Scopus ID2-s2.0-85128564826
Citation statistics
Cited Times:17[WOS]   [WOS Record]     [Related Records in WOS]
Document TypeJournal article
Identifierhttp://repository.uic.edu.cn/handle/39GCC9TT/8921
CollectionFaculty of Science and Technology
Corresponding AuthorCai, Zongwei
Affiliation
1.Food Science and Technology Program,Beijing Normal University-Hong Kong Baptist University United International College,Zhuhai,519087,China
2.State Key Laboratory of Environmental and Biological Analysis,Department of Chemistry,Hong Kong Baptist University,Hong Kong,Hong Kong
3.Department of Nutrition,Food Safety and Toxicology,West China School of Public Health,Sichuan University,Chengdu,610041,China
First Author AffilicationBeijing Normal-Hong Kong Baptist University
Recommended Citation
GB/T 7714
Zeng, Ting,Liang, Yanshan,Dai, Qingyuanet al. Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles[J]. Chinese Chemical Letters, 2022, 33(12): 5184-5188.
APA Zeng, Ting., Liang, Yanshan., Dai, Qingyuan., Tian, Jinglin., Chen, Jinyao., .. & Cai, Zongwei. (2022). Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles. Chinese Chemical Letters, 33(12), 5184-5188.
MLA Zeng, Ting,et al."Application of machine learning algorithms to screen potential biomarkers under cadmium exposure based on human urine metabolic profiles". Chinese Chemical Letters 33.12(2022): 5184-5188.
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