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	Genomic prediction with NetGP based on gene network and multi-omics data in plants Journal article Plant Biotechnology Journal,2025, volume: 23, issue: 4, pages: 1190-1201 Authors: Zhao, Longyang; Tang, Ping; Luo, Jinjing; Liu, Jianxiang; Peng, Xin Favorite \| View/Download：4/0 \| Submit date：2025/05/06 deep learning feature selection gene network genomic selection multi-omics predictions
	TENET: Triple-enhancement based graph neural network for cell-cell interaction network reconstruction from spatial transcriptomics Journal article Journal of Molecular Biology,2024, volume: 436, issue: 9 Authors: Lee, Yujian; Xu, Yongqi; Gao, Peng; Chen, Jiaxing Favorite \| View/Download：7/0 \| Submit date：2024/05/07 cell-cell interaction network reconstruction deep learning gene regulatory network graph neural network spatial transcriptomics
	dynDeepDRIM: a dynamic deep learning model to infer direct regulatory interactions using time-course single-cell gene expression data Journal article Briefings in bioinformatics,2022, volume: 23, issue: 6 Authors: Xu, Yu; Chen, Jiaxing; Lyu, Aiping; Cheung, William K.; Zhang, Lu Favorite \| View/Download：5/0 \| Submit date：2023/02/14 gene functional annotation gene regulatory network time-course single-cell RNA sequencing transitive interactions
	DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data Journal article Briefings in bioinformatics,2021, volume: 22, issue: 6 Authors: Chen, Jiaxing; Cheong, Chin Wang; Lan, Liang; Zhou, Xin; Liu, Jiming Favorite \| View/Download：9/0 \| Submit date：2022/05/18 deep neural network gene regulatory network single-cell RNA sequencing transitive interactions